PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe3G039200.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family LBD
Protein Properties Length: 291aa    MW: 32092 Da    PI: 7.0529
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe3G039200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260100.51.6e-314107199
             DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 
                        +C++C+vlr++C+++C ++p++     p++q++++ +++k++G++ +++l+++ pe+ r+++++sl+yeA+ r+ +P+yG+vg+++++++ql
  Aqcoe3G039200.1.p   4 SCNGCRVLRKGCSENCSIRPCLqwiktPESQANATVFLAKFYGRAGLMNLINSGPEHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQL 95 
                        6******************************************************************************************* PP

             DUF260  88 eqlkaelallke 99 
                        +q+++e++l ++
  Aqcoe3G039200.1.p  96 CQAAVEAVLKGT 107
                        *****9988765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381558.6E-951287IPR017414LOB domain-containing protein 10/36/41
PROSITE profilePS5089117.3043109IPR004883Lateral organ boundaries, LOB
PfamPF031953.7E-254103IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSENCS IRPCLQWIKT PESQANATVF LAKFYGRAGL MNLINSGPEH  60
LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GSWQLCQAAV EAVLKGTPIM QISSEVAAIS  120
PSPPLKAYDI RHVSKDENSS AASQELHKVK TRSRFKRSGA GKAANNKQVN ESNKVHTYLD  180
RAPSHESSVS HQTELNNGEG CSRETESMFS VETVEASLVN RADPEPVPKF DNFNGSDADD  240
NNNDDVELEL TLGFEPSRRE KSMSPKKWRD EINNSYTDTC KIEVGIDYAV *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010263769.11e-127PREDICTED: LOB domain-containing protein 41-like
SwissprotQ9M8861e-94LBD41_ARATH; LOB domain-containing protein 41
TrEMBLW9RUX71e-121W9RUX7_9R
STRINGGLYMA18G53440.11e-118(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.15e-95LOB domain-containing protein 41